[Solved] Digital inputs 0 and 1 not working

Grumpy's right. I just wanted you to figure out why the voltage wasn't gonna be what you expected.

You weren't overlooking anything really, you knew they were used for Serial but I bet you didn't look at the schematic and see the difference.

The other option is to remove the resistors (R8 and R9). Then it should behave like all the rest.