I went to Atmel's "Technology on Tour" training today, which was essentially an introduction to Atmel Studio and the Atmel Software Framework (pay $99, get a JTAG ICE3 and a xmega a3bu Xplained board. good deal.) (also, the training was pretty good.)
AS/ASF has a "quick start" mode where you can set up a project based on a bunch of pre-defined "boards" (like the xplained boards.
One of the pre-defined boards is the Arduino Due...