Progress everyone =P!!! I tried grounding the RTS line with a 100nF capacitor in between! And guess what?? the process went as far as beginning to flash the blink sketch!! But stopped in the middle of the sending with the programmer is out of sync error:
avrdude: Send: 0 [30] [20]
avrdude: Send: 0 [30] [20]
avrdude: Send: 0 [30] [20]
avrdude: Recv: . [14]
avrdude: Recv: . [10]
AVR Part : ATMEGA1284P
Chip Erase delay : 9000 us
PAGEL : PD7
BS2 : PA0
RESET disposition : dedicated
RETRY pulse : SCK
serial program mode : yes
parallel program mode : yes
Timeout : 200
StabDelay : 100
CmdexeDelay : 25
SyncLoops : 32
ByteDelay : 0
PollIndex : 3
PollValue : 0x53
Memory Detail :
Block Poll Page Polled
Memory Type Mode Delay Size Indx Paged Size Size #Pages MinW MaxW ReadBack
----------- ---- ----- ----- ---- ------ ------ ---- ------ ----- ----- ---------
eeprom 65 10 128 0 no 4096 8 0 9000 9000 0xff 0xff
Block Poll Page Polled
Memory Type Mode Delay Size Indx Paged Size Size #Pages MinW MaxW ReadBack
----------- ---- ----- ----- ---- ------ ------ ---- ------ ----- ----- ---------
flash 65 10 256 0 yes 131072 256 512 4500 4500 0xff 0xff
Block Poll Page Polled
Memory Type Mode Delay Size Indx Paged Size Size #Pages MinW MaxW ReadBack
----------- ---- ----- ----- ---- ------ ------ ---- ------ ----- ----- ---------
lock 0 0 0 0 no 1 0 0 9000 9000 0x00 0x00
Block Poll Page Polled
Memory Type Mode Delay Size Indx Paged Size Size #Pages MinW MaxW ReadBack
----------- ---- ----- ----- ---- ------ ------ ---- ------ ----- ----- ---------
lfuse 0 0 0 0 no 1 0 0 9000 9000 0x00 0x00
Block Poll Page Polled
Memory Type Mode Delay Size Indx Paged Size Size #Pages MinW MaxW ReadBack
----------- ---- ----- ----- ---- ------ ------ ---- ------ ----- ----- ---------
hfuse 0 0 0 0 no 1 0 0 9000 9000 0x00 0x00
Block Poll Page Polled
Memory Type Mode Delay Size Indx Paged Size Size #Pages MinW MaxW ReadBack
----------- ---- ----- ----- ---- ------ ------ ---- ------ ----- ----- ---------
efuse 0 0 0 0 no 1 0 0 9000 9000 0x00 0x00
Block Poll Page Polled
Memory Type Mode Delay Size Indx Paged Size Size #Pages MinW MaxW ReadBack
----------- ---- ----- ----- ---- ------ ------ ---- ------ ----- ----- ---------
signature 0 0 0 0 no 3 0 0 0 0 0x00 0x00
Block Poll Page Polled
Memory Type Mode Delay Size Indx Paged Size Size #Pages MinW MaxW ReadBack
----------- ---- ----- ----- ---- ------ ------ ---- ------ ----- ----- ---------
calibration 0 0 0 0 no 1 0 0 0 0 0x00 0x00
Programmer Type : Arduino
Description : Arduino
avrdude: Send: A [41] . [80] [20]
avrdude: Recv: . [14]
avrdude: Recv: . [03]
avrdude: Recv: . [10]
avrdude: Send: A [41] . [81] [20]
avrdude: Recv: . [14]
avrdude: Recv: . [04]
avrdude: Recv: . [10]
avrdude: Send: A [41] . [82] [20]
avrdude: Recv: . [14]
avrdude: Recv: . [05]
avrdude: Recv: . [10]
avrdude: Send: A [41] . [98] [20]
avrdude: Recv: . [14]
avrdude: Recv: . [03]
avrdude: Recv: . [10]
Hardware Version: 3
Firmware Version: 4.5
avrdude: Send: A [41] . [84] [20]
avrdude: Recv: . [14]
avrdude: Recv: . [03]
avrdude: Recv: . [10]
avrdude: Send: A [41] . [85] [20]
avrdude: Recv: . [14]
avrdude: Recv: . [03]
avrdude: Recv: . [10]
avrdude: Send: A [41] . [86] [20]
avrdude: Recv: . [14]
avrdude: Recv: . [03]
avrdude: Recv: . [10]
avrdude: Send: A [41] . [87] [20]
avrdude: Recv: . [14]
avrdude: Recv: . [03]
avrdude: Recv: . [10]
avrdude: Send: A [41] . [89] [20]
avrdude: Recv: . [14]
avrdude: Recv: . [03]
avrdude: Recv: . [10]
Vtarget : 0.3 V
Varef : 0.3 V
Oscillator : 28.800 kHz
SCK period : 3.3 us
avrdude: Send: A [41] . [81] [20]
avrdude: Recv: . [14]
avrdude: Recv: . [04]
avrdude: Recv: . [10]
avrdude: Send: A [41] . [82] [20]
avrdude: Recv: . [14]
avrdude: Recv: . [05]
avrdude: Recv: . [10]
avrdude: Send: B [42] . [82] . [00] . [00] . [01] . [01] . [01] . [01] . [03] . [ff] . [ff] . [ff] . [ff] . [01] . [00] . [10] . [00] . [00] . [02] . [00] . [00] [20]
avrdude: Recv: . [14]
avrdude: Recv: . [10]
avrdude: Send: E [45] . [05] . [08] . [d7] . [a0] . [00] [20]
avrdude: Recv: . [14]
avrdude: Recv: . [10]
avrdude: Send: P [50] [20]
avrdude: Recv: . [14]
avrdude: Recv: . [10]
avrdude: AVR device initialized and ready to accept instructions
Reading | avrdude: Send: u [75] [20]
avrdude: Recv: . [14] . [1e] . [97] . [05] . [10]
################################################## | 100% 0.01s
avrdude: Device signature = 0x1e9705
avrdude: Send: V [56] . [a0] . [0f] . [fc] . [00] [20]
avrdude: Recv: . [14]
avrdude: Recv: . [00]
avrdude: Recv: . [10]
avrdude: Send: V [56] . [a0] . [0f] . [fd] . [00] [20]
avrdude: Recv: . [14]
avrdude: Recv: . [00]
avrdude: Recv: . [10]
avrdude: Send: V [56] . [a0] . [0f] . [fe] . [00] [20]
avrdude: Recv: . [14]
avrdude: Recv: . [00]
avrdude: Recv: . [10]
avrdude: Send: V [56] . [a0] . [0f] . [ff] . [00] [20]
avrdude: Recv: . [14]
avrdude: Recv: . [00]
avrdude: Recv: . [10]
avrdude: reading input file "C:\Users\Basel\AppData\Local\Temp\build7393332655608101916.tmp\Blink.cpp.hex"
avrdude: writing flash (1196 bytes):
Writing | avrdude: Send: U [55] . [00] . [00] [20]
avrdude: Recv:
avrdude: stk500_loadaddr(): (a) protocol error, expect=0x14, resp=0x55
avrdude: Send: d [64] . [01] . [00] F [46] . [0c] . [94] . [85] . [00] . [0c] . [94] . [a5] . [00] . [0c] . [94] . [a5] . [00] . [0c] . [94] . [a5] . [00] . [0c] . [94] . [a5] . [00] . [0c] . [94] . [a5] . [00] . [0c] . [94] . [a5] . [00] . [0c] . [94] . [a5] . [00] . [0c] . [94] . [a5] . [00] . [0c] . [94] . [a5] . [00] . [0c] . [94] . [a5] . [00] . [0c] . [94] . [a5] . [00] . [0c] . [94] . [a5] . [00] . [0c] . [94] . [a5] . [00] . [0c] . [94] . [a5] . [00] . [0c] . [94] . [a5] . [00] . [0c] . [94] . [a5] . [00] . [0c] . [94] . [a5] . [00] . [0c] . [94] . [c4] . [00] . [0c] . [94] . [a5] . [00] . [0c] . [94] . [a5] . [00] . [0c] . [94] . [a5] . [00] . [0c] . [94] . [a5] . [00] . [0c] . [94] . [a5] . [00] . [0c] . [94] . [a5] . [00] . [0c] . [94] . [a5] . [00] . [0c] . [94] . [a5] . [00] . [0c] . [94] . [a5] . [00] . [0c] . [94] . [a5] . [00] . [0c] . [94] . [a5] . [00] . [0c] . [94] . [a5] . [00] . [0c] . [94] . [a5] . [00] . [0c] . [94] . [a5] . [00] . [0c] . [94] . [a5] . [00] . [0c] . [94] . [a5] . [00] . [00] . [00] ! [21] . [00] $ [24] . [00] ' [27] . [00] * [2a] . [00] . [00] . [00] " [22] . [00] % [25] . [00] ( [28] . [00] + [2b] . [00] . [00] . [00] [20] . [00] # [23] . [00] & [26] . [00] ) [29] . [00] . [02] . [02] . [02] . [02] . [02] . [02] . [02] . [02] . [04] . [04] . [04] . [04] . [04] . [04] . [04] . [04] . [03] . [03] . [03] . [03] . [03] . [03] . [03] . [03] . [01] . [01] . [01] . [01] . [01] . [01] . [01] . [01] . [01] . [02] . [04] . [08] . [10] [20] @ [40] . [80] . [01] . [02] . [04] . [08] . [10] [20] @ [40] . [80] . [01] . [02] . [04] . [08] . [10] [20] @ [40] . [80] . [01] . [02] . [04] . [08] . [10] [20] @ [40] . [80] . [00] . [00] . [00] . [01] . [02] . [00] . [08] . [09] . [00] . [00] . [00] . [00] . [04] . [03] . [07] . [06] . [00] . [00] . [00] . [00] . [00] . [00] [20]
avrdude: Recv:
avrdude: stk500_paged_write(): (a) protocol error, expect=0x14, resp=0x64
avrdude: Send: V [56] @ [40] . [00] . [00] . [0c] [20]
avrdude: Recv:
avrdude: stk500_cmd(): programmer is out of sync