I need a hundred bright morse code emitters - must be light, bright and small.

You would program them on the ground before launching? Not trying to send messages to them as they fly?
'328P has 2K EEPROM, can develop a protocol that inteprets each byte for a symbol.
Use 7 bits for 128 characters, 8th bit to indicate if there is a letter pause or a word pause between letters.
So 0x00 for letter to letter pause, 0x80 for word to word pause.

A stripped arduino board with FTFI header and 20 LEDs all driven at the same time would be easy to implement.
Add an inexpensive 315/434 MHz receiver to download a message wirelessly.
Couple of pins used for dip switch jumper so each can be assigned an address.
3.7V LiPo battery, power the 328P directly, run at 8 MHz.
You need to define board size, thru hole or SMD, LED size, and add a transistor to drive 20 LEDs in parallel. Or boost the voltage and drive LEDs in series to cut down on current needs - 20 LEDs in parallel at 20mA each, or 4 strings of 5 LEDs powered at 12V and 20mA?