[SOLVED] ATmega328 on BreadBoard Bootloader Question

CrossRoads:
Ok, you have 6 wires coming out of the pocket programmer - not one of them goes to PIN 1.

Fix your wiring - I think you are mixing up the software name for the pins with hardware names.
Make the pocket programmer connect to these pins:

SCK - physical pin 19
MISO - physical pin 18
MOSI - physical pin 17
RESET - physical pin 1

Thanks that worked on the USBTinyISP even with the reset switch in the way.

On the Arduino UNO R3 remove the chips and use the header not the shield connectors to do the same thing? One of the diagrams shows them using the shield rail without the chip in place and using 13,12,~11 and ~10. But if the chip is removed then how can those be used?

I am trying the Arduino now but using the header. Not sure about the shield pins

Thanks Again!!

EDITED:

So the issue is resolved with USBTinyISP. It works without all the trouble I described. I cannot get the Arduino UNO R3 to work. I get a Not in Sync.

Do I need to put a resistor on the shield reset pin and +5 volts?

EDITED AGAIN:

From the diagrams:

It not 100% clear put it looks like the ATmega328 is not removed from the Arduino Uno R3 when burning a bootloader onto another ATmega328 on a breadboard for example.

Is this true? Can I use either the 6 pin header or the Pins off the shield as shown from the link above?

Thanks