Similar to KITT light bar but not...I need help please

Here is a link to what it currently does, I took off the diffuser I had over it and realized the upper LEDs are staying lit very dimly and blue when they should have nothing to do with blue.
They bottom 2 are supposed to go from red to blue, with only a dark blue lit at the end.

http://dl.dropbox.com/u/39860181/Video1.mov

That code is as follows, without everything above the void loop() cause its all the same.

void loop() {
  
  for (int i=0; i<NumLEDs; i++) { // Reinitialize red
    LEDChannels[i][0] = 1023;
    LEDChannels[i][2] = 1;
  }
  WriteLEDArray();
  effectOn = true;
//  delay(500);
  
  
  while(effectOn){                      //loop during animation
    for (int i=0; i<NumLEDs;i++) {        //loop between RGB writes
    
      if(LEDChannels[i][0] < colorStep){  //color shift from red - blue
        LEDChannels[i][0] = 0;
      }
      else{
      LEDChannels[i-2][0] -= colorStep;
      }   

      if(LEDChannels[i][2] > (1023 - colorStep)){  //color shift from red - blue
        LEDChannels[i][2] = 1023;
      }
      else{
//      LEDChannels[i][2] += colorStep;
      LEDChannels[NumLEDs-2][2] += colorStep;
      LEDChannels[NumLEDs-1][2] += colorStep;
      WriteLEDArray();
 
            }
     
     }

    if(LEDChannels[NumLEDs-3][0] == 0){    
        effectOn = false;
        delay(500);
      }
    }
  }