Eagle - Double sided PCB - Vias on top but soldering on bottom

Tools -> DRC tells the design rule checker what spacing to complain about.

On the autorouter main dialog, look at "grid spacing" to adjust the minimum distance between autorouted traces.

If by "ground" you mean ground plane, look at the properties (the "i" button on the top left) and adjust "spacing" and, IIRC, "isolate" parameters. Hit ratsnest to see changes.

-j