I totally agree, but when typing long lines of code, which for example might contain if else conditions, it sometimes becomes hard to tell which Closing bracket/Brace belongs to which Opening bracket....if the code is auto formatted in the manner it is done in CoceBlocks, it becomes a lot easier.
Another thing i wanted to ask was, as i have read, your versions of Arduino IDE use newer WinAVR versions....can that ever cause anything to go wrong..? has it ever happened that a code would work fine on the original IDE and not work properly on your IDE??
I cant wait for u to port all you have done to the Due software 
Regards