IDE 1.5.7 and 1.5.8 kill my wavetable synth. Help!

For a sanity check I tried the same thing with my second DUE board - same problem: works with 1.5.6-R2, but not with 1.5.7.
The revisions.txt is the same as the release notes at http://arduino.cc/en/Main/ReleaseNotes
I can't see a likely culprit here:
ARDUINO 1.5.7 BETA - 2014.07.07

[core]

  • Upgraded AVR toolchain: gcc 4.8.1, avr-libc 1.8.0
  • Upgraded ARM toolchain: gcc 4.8.3-2014q1
  • Upgraded avrdude to version 6.0.1
  • ARM gcc doesn't require ia32-libs anymore on 64 bits linux systems
  • avr: fixed typo in SerialEvent3 handling (Matthijs Kooijman)
  • avr: HardwareSerial support for different size of TX and RX buffer sizes (Jan Baeyens)
  • avr: HardwareSerial support for buffer sizes bigger than 256 bytes (Jan Baeyens)
  • sam: Added configuration (parity, data bits, stop bits) to Serial1/2/3 of Arduino Due (bluesign2k)
  • Removed a lot of compiler warnings from Arduino core
  • avr: Fix EXTERNAL_NUM_INTERRUPTS for atmega128rfa1 and atmega256rfr2 (Matthijs Kooijman)
  • sam: Fix to Wire::endTransmisson() return value (bluesign2k)
  • sam: Fix to Wire usage of TWI status register (bluesign2k)
  • avr: Fixed PROGMEM statements to be compatible with newer avr gcc (Scott Howard)

[ide]

  • Moved to appbundler for building releases for MacOSX. (Haavar Valeur)
    This should remove dependency from Java 1.6 on recent MacOSX.
  • Added support for '-' and '.' in filenames (Georg von Zengen)
  • (re)Added 'arduino_debug.exe' in Windows build for debugging purposes
  • Magic baudrate is no longer removed (it was a workaround for RXTX)
    (for more info see github issues: #1203 and #995)
  • Allow overriding platform.txt using platform.local.txt (Matthijs Kooijman)
  • Explicitly define compiler.path in avr/platform.txt (Matthijs Kooijman)
  • Make the low available memory message a warning (Matt Robinson)
  • Proceed with upload even if port can't be found (David Mellis)
  • Added support for ArduinoISP
  • Windows: added board detection on serial port menu

[libraries]

  • Updated SpaceBrew library
  • Fixed HttpClient::running() function
  • Fixed HttpClient::ready() function (Manuel Rabade)
  • Added HttpClient::noCheckSSL() method
  • Improved speed of YunSerialTerminal
  • Fixed CRC of shutdown command on YunSerialTerminal example
  • Updates/Fix to various examples
  • Added Wire.setClock(..) method (Kristian Sloth Lauszus)

The following changes are included also in the (not yet released) Arduino IDE 1.0.6:

[core]

  • avr: Improved USB-CDC write speed (Justin Rajewski)
  • avr: Improved USB-CDC read code (Paul Brook)
  • avr: Fixed race condition in USB-CDC transmit (Paul Brook)
  • Fixed wrong NULL pointer handling in Stream class (Amulya Kumar Sahoo)
  • Added initVariant() hook to allow 3rd party variant-specific initialization

[ide]

  • Fix toolchain command line to compile assembler files (Jimmy Hedman)
  • If two libraries have the same header file use the lib with the same folder name (Paul Stoffregen)

[libraries]

  • Robot_Control: removed duplicated SPI and Wire (Xun Yang)
  • Robot_Control: fixed issue on motors being opposite (Xun Yang)
  • Robot_Control: updated turning algorithm (Xun Yang)
  • Esplora: added reading form Tinkerkit inputs
  • SoftwareSerial: Fix idle level when initializing with inverted logic (Jens-Christian Skibakk)

[firmware]

  • Wifishield: fixed paths on firmware upgrade scripts