Graynomad:
Here's a sample with the new graphic, you'll notice that I am now able to place the SPI labels in an appropriate place. This should work OK for all of the internal headers although the Cortex debugging one might be a problem.
That is awesomely a lot better!
(If you have to increase size etc, I would prefer that it would scale/fit on an A4/Letter papersize, I'm going to print it out fullsize for reference)
I guess you are going to mark the usb ports also? which is native, which is programming, strange that they are not labeled on the board..