My first post mentioned that I ordered my boards from: http://www.oshpark.com/
It's been a while and since then the boards came in, have been populated and my layout is up and running. Manufacturing them and delivery took around 30 days but if you are in no rush then do recommend them. The quality is great for prototype boards. The drill hole alignment on the pads was well centered but the silkscreen was off a bit only on the backside. No worries there as long as the drill holes are good.
This was my first custom board so dropping the bootloader on was interesting. It turned out to be easier then what I was expecting. In my world, that never happens.
Check it out at:https://sites.google.com/site/0miker0/Designing-your-custom-Arduino-Board