Oh the bootloader is gone. Its been while since i've tested it and I haven't tested it on 1.0.1 but the IDE used to checkthe code size and if it was larger than the size specified in the boards.txt file (upload.maximum.size) it wouldn't uploadthe image.The issue was (at least it used to work this way) was that if you used ISP, you could gain the bootloaderspace but the space is still "reserved" by the IDE as it always uses the size in upload.maximum.sizeto check the image size against before uploading because it doesn't know if the programmer being used is using ISP or a bootloader.
All that's changed is the chip, the bootloader, the core libraries, and the IDE... :-)
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