I've solved this problem by adding this to /hardware/boards.txt:
(I have Arduino Mega with ATMEGA1280)
mega.name=Arduino Mega
mega.upload.protocol=stk500
mega.upload.maximum_size=126976
mega.upload.speed=57600
mega.bootloader.low_fuses=0xFF
mega.bootloader.high_fuses=0xDA
mega.bootloader.extended_fuses=0xF5
mega.bootloader.path=atmega
mega.bootloader.file=ATmegaBOOT_168_atmega1280.hex
mega.bootloader.unlock_bits=0x3F
mega.bootloader.lock_bits=0x0F
mega.build.mcu=atmega1280
mega.build.f_cpu=16000000L
mega.build.core=arduino
Then select Arduino Mega from board list. Maybe help ....