To be clear, you're referring to the FTDI Breakout from SparkFun, the red board in the lower picture. Looks like you're right and the lower picture is wrong. I've never gone by the "color coding" and always by the function labels on the boards. I used an angled header on my Pro Mini and with this, all components are topside on both boards.
(If using that board for a 5V/16MHz Pro Mini, you need to make a patch on that board to support 5V USB supply instead of 3.3V FTDI supply.)