TFT with ILI9163C and MCU control

Disconnect your 3.3V display from the Uno, Mega.
Upload any program to your 5V Uno, Mega.
Disconnect Uno. Connect 3.3V display. Power the Uno with 3.3V not USB.
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Or run the Pro Mini at 3.3V with an external 3.3V Serial dongle.
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Or buy thirteen level converter chips.
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It is much easier and cheaper to buy a 3.3V Zero, Due clone. Or a switchable Uno clone like me.
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Please say which 3.3V strategy you have chosen. Or post a photo.
The display may already be damaged by 5V.

David.