Help with coding...

This is a new code version of V0.1

Code V0.2:

#include <Keypad.h>

const byte ROWS = 4; //four rows
const byte COLS = 3; //three columns
char keys[ROWS][COLS] = {
  {'1','2','3'},
  {'4','5','6'},
  {'7','8','9'},
  {'#','0','*'}
};
byte rowPins[ROWS] = {12, 11, 10, 9}; //connect to the row pinouts of the keypad
byte colPins[COLS] = {8, 7, 6}; //connect to the column pinouts of the keypad

Keypad keypad = Keypad( makeKeymap(keys), rowPins, colPins, ROWS, COLS );

int VARone = 0;
int VARtwo = 0 ;
int VARthree = 0;
int One1 = 0;
int Two2 = 0;
int Three3 = 0;
int total = 0;

void setup() 
{
  // put your setup code here, to run once:
  Serial.begin(9600);
  pinMode(2,INPUT);
  pinMode(5,OUTPUT);
  pinMode(4,OUTPUT);
}

void loop() 
  {
    // put your main code here, to run repeatedly:
    if (digitalRead(2))//Reset Loop
    {
      VARone = (0);
      VARtwo = (0);
      VARthree = (0);
      One1 = (0);
      Two2 = (0);
      Three3 = (0);
      total = (0);
    }
    else
    {
		if(digitalRead(3))//Calculation loop
		{
			
			if(VARone == 1)//Runs calculation when there is only one variable
			{
				total = (One1);//Takes one inputted number like; '5'
			}
			else
			{
				if((VARone == 1)&&(VARtwo == 1))//Runs calculation when there is only two variables
				{
					total =  (((One1)*(10))+((Two2)));//Takes two inputted numbers and calculates like; '60'
				}
				else
				{
					if((VARone == 1)&&(VARtwo == 1)&&(VARthree== 1))//Runs calculation when there is only three variables
					{
						total = ((((One1)*(100))+((Two2)*(10)))+(Three3));//Takes three inputted numbers and calculates like; '111'
					}
				}
			}
        }
		else//keypad loop
        {
			char key = keypad.getKey();
			Serial.println(One1);
			delay(11);
			if((VARone)==(0))//Test if variable one is equal to 0
			{
				//Get key from 0 - 9 and set it to variable one
				char key = keypad.getKey();
				if(key != NO_KEY)
				{
					One1==(key);
					VARone==1;
				}
			}
			else
			{
				delay(11);
				if(((VARone)==(1))&&((VARtwo)==(0)))//Test variable one is equal to 1, whilst variable two is equal to 0
				{
					//Get key from 0 - 9 and set it to variable two
					char key = keypad.getKey();
					if(key != NO_KEY)
					{
						Two2==(key);
						VARtwo==1;
					}
				}
				else
				{
					delay(11);
					if(((VARone)==(1))&&((VARtwo)==(1))&&((VARthree)==(0)))//Test variable one and variable two is equal to 1, whilst variable three is equal to 0
					{
						//Get key from 0 - 9 and set it to variable three
						char key = keypad.getKey();
						if(key != NO_KEY)
						{
							Three3==(key);
							VARthree==1;
						}
					}
					else//loop
					{
						digitalWrite(4,HIGH);
						analogWrite(5,255);
						delay(11);
						analogWrite(5,0);
						digitalWrite(4,LOW);
						delay((60000)/(total));//makes a delay, e.g. 60000/111 = 540.540540541ms
					}
				}
			}	
		}
        
    }
}