A clear and simple flow

OK, now I have Cygwin.

The folder structure is as in attachement, project folder is MKRVIDOR4000_prova.
In which folder to go in order to run the script?
What should be the result (what folder should be created, what files, what to do
next) ?

Sorry to ask for that but I cannot find any instructions.
Thanks
Fabio

structure1.jpg

structure2.jpg

structure3.jpg