You damaged some other component on the board which is now near-shorted internally and is drawing tons of current and turning it into heat. The opamp for the power switching circuit is hosed for sure (the L led is stuck on too isn't it?) Assuming the Leo buffers it like the uno - I don't know if it does, hardly anyone here seems to use them, probably because for all the use cases that a leo is an appropriate board for are beter served by either an UIno or a Micro.....
Discard the board and purchase another. Leo clones are under $7/ea shipped, it's not worth your time even if you value your time at minimum wage and had the skills you would need to repair it. Which, based on the fact that you're asking questions like this and talking about putting current into the board, you do not. Trying to fix boards that you trashed through electrical abuse just isn't worth tthe time or the effort. I don't even bother with it, and usually when a board fails in my possession, there's no mystery in my head about what I trashed and how I'd go about fixing it...
Frankly, I;m amazed the 32u4 is still alive...