any help would be great with this project.

/* 
 * First Section: configure the periodical execution of a user 
 * defined function (Interrupt service routine) using Timer2. This 
 * example will run the function every 1ms.  
 */

#include <Bounce.h> 

/* Timer2 reload value, globally available */
unsigned int tcnt2;  

int pin1 = 12;
int pin2 = 11;
int counter = 0;
int oldCounter = 0;

// Instantiate a Bounce object with a 5 millisecond debounce time
// Only pin1 needs to be debounced. It is assumed that pin2
// will be stable when reading pin1
Bounce bouncer1 = Bounce( pin1,5 );

/* Second Section:
Use 3 74HC595 shift registers to display 3 numbers on 
common cathode 7-segments LEDs, and one more 595 to turn a series of
10 LEDs on and off.
This code should work for any digit assembly, but was specifically
used to recuperate the digits of an old Line 6 floor board.
U1 pin 12 is Latch
U1 pin 11 is Clock
U1 pin 14 is Serial data input.
*/
int LatchPin = 6;
int ClockPin = 5;
int DataPin = 7;
char m[4];
byte data;
byte dataArray[10]; //character segment matrice
int k = 100; //divider for number display
int showLed = 0x00; //led array
int dp1 = 0x00; //connected to LED 1
int dp2 = 0x00; //connected to LED 2
int dp3 = 0x00; //connected to decimal point on digit 1

//definitions for pedals and their LEDs
int express=1;
int oldExpressValue = 0;
int wah=2;
int oldWahValue = 0;
int swresist=0;
int resistValue;
int showTemp = 0;

//third section: MIDI
// general midi notes
char note1 = 60; //Middle C
char note2 = 62; //D
char note3 = 64; //E
char note4 = 65; //F
char note5 = 67; //G
char note6 = 69; //A
char lastCmd[3] = {0x00,0x00,0x00};

//Fourth Section: General setup
int pin13 = 13;

void setup() {
  //setup for the display
  pinMode(LatchPin, OUTPUT);
  pinMode(ClockPin, OUTPUT);
  pinMode(DataPin, OUTPUT);
  //setup for the rotary encoder
  pinMode(pin1, INPUT);
  pinMode(pin2, INPUT);

  Serial.begin(31250);

//This section for the Timer Interrupt

   /* First disable the timer overflow interrupt while we're configuring */
  TIMSK2 &= ~(1<<TOIE2);  

  /* Configure timer2 in normal mode (pure counting, no PWM etc.) */
  TCCR2A &= ~((1<<WGM21) | (1<<WGM20));  
  TCCR2B &= ~(1<<WGM22);  

  /* Select clock source: internal I/O clock */
  ASSR &= ~(1<<AS2);  

  /* Disable Compare Match A interrupt enable (only want overflow) */
  TIMSK2 &= ~(1<<OCIE2A);  

  /* Now configure the prescaler to CPU clock divided by 128 */
  TCCR2B |= (1<<CS22)  | (1<<CS20); // Set bits  
  TCCR2B &= ~(1<<CS21);             // Clear bit  

  /* We need to calculate a proper value to load the timer counter. 
   * The following loads the value 131 into the Timer 2 counter register 
   * The math behind this is: 
   * (CPU frequency) / (prescaler value) = 125000 Hz = 8us. 
   * (desired period) / 8us = 125. 
   * MAX(uint8) + 1 - 125 = 131; 
   */
  /* Save value globally for later reload in ISR */
  tcnt2 = 131;   

  /* Finally load end enable the timer */
  TCNT2 = tcnt2;  
  TIMSK2 |= (1<<TOIE2);  
}  

/* 
 * Install the Interrupt Service Routine (ISR) for Timer2 overflow. 
 * This is normally done by writing the address of the ISR in the 
 * interrupt vector table but conveniently done by using ISR()  */
ISR(TIMER2_OVF_vect) {  
  /* Reload the timer */
  TCNT2 = tcnt2;  

  bouncer1.update();
  if(bouncer1.risingEdge()){
    oldCounter = counter;
    if (digitalRead(pin2)){
      counter--;
    }
      else{
      counter++;
    }
  }

//End of Timer Interrupt section

//Define character images in an array
  dataArray[0] = 0x3f; // 0
  dataArray[1] = 0x06; // 1
  dataArray[2] = 0x5B; // 2
  dataArray[3] = 0x4F; // 3
  dataArray[4] = 0x66; // 4
  dataArray[5] = 0x6D; // 5
  dataArray[6] = 0x7C; // 6
  dataArray[7] = 0x07; // 7
  dataArray[8] = 0x7F; // 8
  dataArray[9] = 0x67; // 9
}

void loop()
{
//Read pedal values and show reading from 0 - 127
//need to be calibrated by hand for now. Routine to come
int expressValue = map(analogRead(express),950,85,0,127);
if (expressValue < (oldExpressValue-1) || expressValue > (oldExpressValue+1)) {
  showValue(expressValue);
  oldExpressValue = expressValue;
  midiCmd(0xB0,0x0B, char(expressValue));
}
int wahValue = map(analogRead(wah),950,85,0,127);
if (wahValue < (oldWahValue-1) || wahValue > (oldWahValue+1)) {
  showValue(wahValue);
  oldWahValue = wahValue;
  midiCmd(0xB0,0x07,char(wahValue));
}

//treat resistor value. No switch pressed = 916/1024
//leds 10,8,7 as MSB then6,5,4 and 3 as LSB binaries
//into variable showLed
  resistValue = analogRead(swresist);
  if ((resistValue > 750) && (lastCmd[1] == char(0x90)) && (lastCmd[2] != 0x00)){ //no pedal pressed -> all notes off
    midiCmd(0x90,lastCmd[2],0x00);
    lastCmd[2] = 0x00;
  }

//  Serial.println(resistValue);
  if (resistValue < 10){
     //Tuner ON
     showLed = 0x80;
     delay(500);
     if(digitalRead(pin13) == LOW)
     digitalWrite(pin13,HIGH);
     else
     digitalWrite(pin13,LOW);
  }
  if (resistValue >= 35 & resistValue < 50){
    //Effect control OR Channel Select
    //Using LED 1 & 2
    delay(500); //wait for switch release. Might need interrupt
    if (dp1 == 0x00){
     dp1 = 0x80;
     dp2 = 0x00;
     dp3 = 0x00;
    }else {
     dp1 = 0x00;
     dp2 = 0x80;
     dp3 = 0x00;
    }
     showLed = 0x00;
  }
  if (resistValue >= 142 & resistValue < 155){
    if(lastCmd[2] != note1)
    midiCmd(0x90, note1, 0x45);
     showLed = 0x01;
  }     
  if (resistValue >= 205 & resistValue < 215){
    if(lastCmd[2] != note2)    midiCmd(0x90, note2, 0x45);
     showLed = 0x02;
  }
  if (resistValue >= 270 & resistValue < 290){
    if(lastCmd[2] != note3)    midiCmd(0x90, note3, 0x45);
     showLed = 0x04;
  }
  if (resistValue >= 350 & resistValue < 500){
    if(lastCmd[2] != note4)    midiCmd(0x90, note4, 0x45);
     showLed = 0x08;
  }
  if (resistValue >= 575 & resistValue < 585){
    //Enter special mode. Light left Decimal point
     dp1 = 0x00;
     dp2 = 0x00;
     dp3 = 0x80;
  }
  if (resistValue >= 640 & resistValue < 650){
    if(lastCmd[2] != note5)    midiCmd(0x90, note5, 0x45);
     showLed = 0x10;
  }
  if (resistValue >= 710 & resistValue < 720){
    if(lastCmd[2] != note6)    midiCmd(0x90, note6, 0x45);
     showLed = 0x20;
  }

//Getting ready to display values and indicators
  if (counter < 0 || counter > 999)
    counter = 0;
  if (oldCounter != counter){
    showValue(counter);
    midiCmdShort(0xC0,counter);
  }
  oldCounter = counter;
//Show me the number!
  liteUpDisplay();
  delay(5);

} /////END of LOOP

//Prepare array to cascade down shift registers
void showValue(int showNumber) {
  int k = 100;
  for (int i = 2; i >= 0; i--)
  {
    m[i] = showNumber / k;
    showNumber = showNumber - (m[i] * k);
    k = k / 10;
  }
}
//Display 3 digits and one of 3 indicators
void liteUpDisplay(){

  digitalWrite(LatchPin, LOW);
  //rightmost digit. Use | (or) with 0x80 to light led 2
  shiftOut(DataPin, ClockPin, MSBFIRST, dataArray[m[0]] | dp1);
  //middle digit. Use | (or) to light led 1
  shiftOut(DataPin, ClockPin, MSBFIRST, dataArray[m[1]] | dp2);
  //lefmost digit. Use | (or) to light decimal point
  shiftOut(DataPin, ClockPin, MSBFIRST, dataArray[m[2]] | dp3);
  //leds 10,8,7 then6,5,4 and 3 as MSB and LSB binaries
  shiftOut(DataPin, ClockPin, MSBFIRST, showLed);
  digitalWrite(LatchPin, HIGH);
  }

// Send a MIDI Command with 3 parts
void midiCmd(char cmd, char data1, char data2) {
  lastCmd[1] = cmd;
  lastCmd[2] = data1;
  lastCmd[3] = data2;
  Serial.write(cmd);
  Serial.write(data1);
  Serial.write(data2);
}
// Send a MIDI Command with 2 parts
void midiCmdShort(char cmd, char data1) {
  lastCmd[1] = cmd;
  lastCmd[2] = data1;
  Serial.write(cmd);
  Serial.write(data1);
}

Moderator edit: [code] ... [/code] tags added. (Nick Gammon)