Nantonos:
There is a dot on the pcb and also a mark on the photo (maybe it should be made more obvious though) and the pinouts are correct for that orientation.
Do we have different boards?, I'm not talking about the new spi header besides SAM, I'm talking about the other, new icsp header closer to the power connector.
Regarding the two spi thingys, one around pins 50-53 is that SPI0?, and the spi for samx, what is that?, I could not find out how to use either, and I mixed up when trying, using both.
Now I also see that the GND's around have different meaning, some for analog, some for digital.. are the gnd on the icsp and spi headers also different?