There is no glitch filtering on the I2C bus of the Arduino DUE.
Firstly you can add e.g. a 10 Ohms resistor in serie on SDA, idem on SCL, and secondly set a timeout. In case the I2C hangs (the timeout is reached), you can reset the I2C bus (see in the DUE sub forum how to do that by sending 9 pulses on the bus). If that's not suffcient, reset the I2C slave with a reset line activated from the I2C Master.