on pins 3, 5, 6, 9, 10, 11, the brightness of leds plugged into those pins are inconsistent when set using the command: analogWrite( pin , 255);
Pins 3 and 11 are at full brightness, while pins 5, 6, 9, and 10 seem to be the same brightness when pins 3 and 11 are set as : analogWrite( pin , 2 );
Pins 3 and 11 are at full brightness, while pins 5, 6, 9, and 10 seem to be the same brightness when pins 3 and 11 are set as : analogWrite( pin , 2 );
You said the resistors are the same. Are all of your LEDs the same color and part type? If not, did you try swapping LEDs to see if it's due to differences? Not all LEDs have the same operating characteristics.
There might be slight differences between PWM pins, due to the differences in their internal timers and comparators, but I'm talking less than 1 or 2%. Shouldn't be noticeable on LEDs except in rare conditions.