I can reproduce it. You can see the problem when run from the command line:
root ERROR Request cloneExample failed with error: ENOENT: no such file or directory, rename 'c:\Users\<user name>\AppData\Local\Temp\.arduinoIDE-unsaved2021827-16716-11heo0w.vdua\Interrupt\Interrupt.pde' -> 'c:\Users\<user name>\AppData\Local\Temp\.arduinoIDE-unsaved2021827-16716-11heo0w.vdua\Interrupt\Interrupt.ino'
It's trying to rename the sketch in the temporary folder rather than in its true path under the library installation.
I don't have this problem with a standalone sketch using the .pde file extension.