Arduino Mega Upload issues

Pin 1 is open, I have now put my PH on pin 13, as seen in the first code below, the second code below is the one that I am trying to get working correctly, sorry about posting incorrectly, I have read many of these forums but this is the first time I have posted. I have also removed the !!! and tried to re-run the program without success.

/*
# This sample codes is for testing the pH meter V1.0.
 # Editor : YouYou
 # Date   : 2013.10.12
 # Ver    : 0.1
 # Product: pH meter
 # SKU    : SEN0161
*/

#define SensorPin 0          //pH meter Analog output to Arduino Analog Input 0
unsigned long int avgValue;  //Store the average value of the sensor feedback
float b;
int buf[10],temp;

void setup()
{
  pinMode(13,OUTPUT);  
  Serial.begin(9600);  
  Serial.println("Ready");    //Test the serial monitor
}
void loop()
{
  for(int i=0;i<10;i++)       //Get 10 sample value from the sensor for smooth the value
  { 
    buf[i]=analogRead(SensorPin);
    delay(10);
  }
  for(int i=0;i<9;i++)        //sort the analog from small to large
  {
    for(int j=i+1;j<10;j++)
    {
      if(buf[i]>buf[j])
      {
        temp=buf[i];
        buf[i]=buf[j];
        buf[j]=temp;
      }
    }
  }
  avgValue=0;
  for(int i=2;i<8;i++)                      //take the average value of 6 center sample
    avgValue+=buf[i];
  float phValue=(float)avgValue*5.0/1024/6; //convert the analog into millivolt
  phValue=3.5*phValue;                      //convert the millivolt into pH value
  Serial.print("    pH:");  
  Serial.print(phValue,2);
  Serial.println(" ");
  digitalWrite(13, HIGH);       
  delay(800);
  digitalWrite(13, LOW); 
}
//**********************************************************

//Water Temperature Information
#include <OneWire.h>

#include <DallasTemperature.h>

OneWire oneWire(A4); //Pin A4 47-Ohm Resistor

DallasTemperature sensors(&oneWire);

//**********************************************************
//Pin Information
int greenLed = 2; //Water Temp Below 80
int redLed = 3; //Water Temp Above 80

const int pump1 = 5; //Main NFT Pump
const int pump2 = 6; //Secondary NFT Pump
int pump3 = 7; //Drip "Dutch Bucket" Pump

#define DHT11PIN A1  //DHT11 Pin A1
const int waterFlow = A2; //Main Pump Flow Detector
const int waterLevel = A3;

#define SensorPin 0          //pH meter Analog output to Arduino Analog Input 0
unsigned long int avgValue;  //Store the average value of the sensor feedback
float b;
int buf[10],temp;

int buttonState = 0;
int buttonState2 = 0;

//**********************************************************

// DHT11 Calculation & Pin information

//Celsius to Fahrenheit conversion
double Fahrenheit(double celsius)
{
	return 1.8 * celsius + 32;
}

#include <dht11.h>

dht11 DHT11;



//**********************************************************

void setup ()
{

 //Pin Callouts
 pinMode(greenLed, OUTPUT); //Water Temp Below 80
 pinMode(redLed, OUTPUT); //Water Temp Above 80
 pinMode(waterFlow, INPUT); //Main Pump Flow Detector
 pinMode(pump1, OUTPUT); //Main NFT Pump
 pinMode(pump2, OUTPUT); //Secondary NFT Pump
 pinMode(pump3, OUTPUT); //Drip "Dutch Bucket" Pump
 
  pinMode(13,OUTPUT);  
  Serial.begin(9600);  
  Serial.println("Ready");    //Test the serial monitor
 
//********************************************************** 

 //Turn on Main NFT Pump "pump1"
  digitalWrite(pump1, HIGH);
  
//**********************************************************  

 }

void loop()
{  
  
    Serial.print("******************************************************");
    Serial.print("\n");  
  
//**********************************************************

//PH Testing

  for(int i=0;i<10;i++)       //Get 10 sample value from the sensor for smooth the value
  { 
    buf[i]=analogRead(SensorPin);
    delay(10);
  }
  for(int i=0;i<9;i++)        //sort the analog from small to large
  {
    for(int j=i+1;j<10;j++)
    {
      if(buf[i]>buf[j])
      {
        temp=buf[i];
        buf[i]=buf[j];
        buf[j]=temp;
      }
    }
  }
  avgValue=0;
  for(int i=2;i<8;i++)                      //take the average value of 6 center sample
    avgValue+=buf[i];
  float phValue=(float)avgValue*5.0/1024/6; //convert the analog into millivolt
  phValue=3.5*phValue;                      //convert the millivolt into pH value
  Serial.print("    pH:");  
  Serial.print(phValue,2);
  Serial.println(" ");
  digitalWrite(13, HIGH);       
  delay(800);
  digitalWrite(13, LOW); 

 if(phValue < 5.5){
   Serial.print("pH LOW!");
   //Serial.print("\n");
   Serial.println();}

 if(phValue > 6.5){
   Serial.print("pH HIGH!");
   //Serial.print("\t");
   Serial.println();}

//**********************************************************

//Flow Control Switch
buttonState = digitalRead(waterFlow);

//**********************************************************

//Water Level Control
buttonState2 = digitalRead(waterLevel);

//**********************************************************
  
//DHT11 Print Files

  //Serial.println("\n");

  int chk = DHT11.read(DHT11PIN);

/*
  Serial.print("Read sensor: ");
  switch (chk)
  {
    case 0: Serial.println("OK"); break;
    case -1: Serial.println("Checksum error"); break;
    case -2: Serial.println("Time out error"); break;
    default: Serial.println("Unknown error"); break;
  }
*/

  Serial.print("Air Temp : ");
  Serial.print(Fahrenheit(DHT11.temperature), 1);
  Serial.println("F");

delay(10);

  Serial.print("Humidity : ");
  Serial.print((float)DHT11.humidity, 1);
  Serial.println("%");

//Water Temperature Alarms
 if(Fahrenheit(DHT11.temperature) < 40){
   Serial.print("FROST ADVISORY!");
   Serial.print("\t");
   Serial.println();}

//**********************************************************

//Water Temperature Print Files
sensors.requestTemperatures();
float currentTemp0;
currentTemp0 = sensors.getTempFByIndex(0);

Serial.print("Water Temp : ");
//Serial.print("\t");
Serial.print(currentTemp0,1);
Serial.println("F");

//Water Temperature Alarms
 if(currentTemp0 > 80){
   Serial.print("WATER To HOT!");
   Serial.print("\t");
   Serial.println();}

 //  Serial.println();
  
//Turn on Green Led if Temperature Less than 80 
  if(currentTemp0 < 79) 
   digitalWrite(greenLed, HIGH);
   if(currentTemp0 < 79)
   digitalWrite(redLed, LOW);
  
//Turn on Red Led if Temperature is Greater than 80  
  if(currentTemp0 > 80)  
   digitalWrite(redLed, HIGH);
  if(currentTemp0 > 80)  
   digitalWrite(greenLed, LOW);

//**********************************************************

//Pump Control
//If waterFlow is Detected & leave pump1 on and leave pump2 off   
  if (buttonState == HIGH) {     
    // turn Pump1 on 
    digitalWrite(pump1, HIGH);} 
  else {
    // turn Pump1 off:
    digitalWrite(pump1, LOW);}

//If waterFlow is NOT Detected turn pump1 off and turn pump2 on  
  if (buttonState == LOW) {     
    // turn Pump1 on 
    digitalWrite(pump2, HIGH);} 
  else {
    // turn Pump1 off:
    digitalWrite(pump2, LOW);}    

   if(buttonState == LOW){
    Serial.print("Pump 1 Failure");
//    Serial.print("\n");
    Serial.println();}

//************************************************************
 
//Water Level
//If water level in tank low is Detected Fill Tank   
/*  if (buttonState2 == HIGH) {     
    // turn Pump1 on 
    digitalWrite(pump1, HIGH);} 
  else {
    // turn Pump1 off:
    digitalWrite(pump1, LOW);}

//If waterFlow is NOT Detected turn pump1 off and turn pump2 on  
  if (buttonState == LOW) {     
    // turn Pump1 on 
    digitalWrite(pump2, HIGH);} 
  else {
    // turn Pump1 off:
    digitalWrite(pump2, LOW);}    
*/
   if(buttonState2 == HIGH){
    Serial.print("Tank Level Low");
//    Serial.print("\n");
    Serial.println();}

//************************************************************ 
 


//Setuence Monitoring only needs to be done ever 15 minutes
//delay(90000);
delay(1000); //Testing Purposes Monitoring
digitalWrite(pump3, LOW); //Drip Pump
//delay(1000); //Remove once in service.
//digitalWrite(pump3,LOW);






}


/*Credits: 
    DojoDave
    Tom Igoe
    Jeremy Blum
    
*/