No it is not bootloaded. It's a new board.
Yes I have supplied power to the board. Yes it shows up in device manager when hooked up without the board. (with a yellow flag cause it says the driver is unsigned)
I have downloaded AVR Studio. I have heard you can compile a sketch in arduino IDE and then upload it using AVR Studio. Can anyone give me a little more direction on that? I was gonna try it to see if it's just a disagreement between arduino IDE and the MKII.