Bluetooth/microcontroller question

Hi everyone,
I just recently built a microcontroller using an ATmega328p-pu and I am wanting to interface a JY-MCU bluetooth module into it. I am using a FT232R breakout board along with arduino software to program. So my question is: can I use the arduino software to program the bluetooth module? If not,what should I use? The rest I will try to figure out on my own but do welcome any advice on the interfacing process.
Any help is most appreciated.

This guy managed to use a BT module to program his Arduino. Also look here and [urlhttp://ame2.asu.edu/staff/kidane/ArdWilessBtProg.pdf]here[/url].