CNC Y-axis issue

I just swapped the Y-axis motors with each other, someway it is now working. but now I have another problem. The X-axis seems to have a lot of clicking sounds from this G-code test to draw a circle. Test

G17 G20 G90 G94 G54
G0 Z0.25
X-0.5 Y0.
Z0.1
G01 Z0. F5.
G02 X0. Y0.5 I0.5 J0. F2.5
X0.5 Y0. I0. J-0.5
X0. Y-0.5 I-0.5 J0.
X-0.5 Y0. I0. J0.5
G01 Z0.1 F5.
G00 X0. Y0. Z0.25