Welcome Dragonwire,
What you are doing ( all 11 circuits and more ) can be done with the Arduino chip and a couple of transistors, or a couple of shift registers.
First have a look at the sticky http://arduino.cc/forum/index.php/topic,97455.0.html
and some notes about LEDs
Then do a search on multiplexing LEDs , or I prefer to use TPIC6B595 shift registers to latch the high current outputs for long strings of LEDs , it can stand 50 volts ) Some of my projects use 2500 LEDs.