If you can, avoid them! if you can't, be sure to have at least a lower value pull up (start with 1k) and apply filtering. This can be in hardware or software.
In hardware something like
VCC
┬
│
long wire 1k
┌─────────────────────┴───100k───┬───Input
│ │
│ 100nF
\ │
│ │
┴ ┴
GND GND
would be pretty efficient I think. Also adds protection to the inputs.