So with all the wires connected exactly as in the fritzing diagram I am still getting this error message when I try to burn the bootloader:
Arduino: 1.6.11 (Mac OS X), Board: "Arduino/Genuino Uno"
avrdude: stk500_getparm(): (a) protocol error, expect=0x14, resp=0x14
avrdude: stk500_getparm(): (a) protocol error, expect=0x14, resp=0x01
avrdude: stk500_initialize(): (a) protocol error, expect=0x14, resp=0x10
avrdude: initialization failed, rc=-1
Double check connections and try again, or use -F to override
this check.
avrdude: stk500_disable(): unknown response=0x12
Error while burning bootloader.
Invalid library found in /Users/Landon/Documents/Arduino/libraries/Arduino-master: /Users/Landon/Documents/Arduino/libraries/Arduino-master
Invalid library found in /Users/Landon/Documents/Arduino/libraries/Arduino.app: /Users/Landon/Documents/Arduino/libraries/Arduino.app
Invalid library found in /Users/Landon/Documents/Arduino/libraries/ArdunioMAVLink: /Users/Landon/Documents/Arduino/libraries/ArdunioMAVLink
Invalid library found in /Users/Landon/Documents/Arduino/libraries/mavlink-master: /Users/Landon/Documents/Arduino/libraries/mavlink-master