I bought a Atmega168PA_PU thinking it was supported by arduino but it turns out that it is not. I had trouble getting burning a bootloader onto the chip which I implemented on a breadboard, but after countless hours I managed to get it burned (Solved a device signature problem http://letsmakerobots.com/node/32096 ). I used a AVRISP MKII or MK2 which I used to burn the bootloader and it worked.
The problem im having is that I cant use my arduino USB2Serial FTDI device to burn a sketch through the UART. I get a device not in sync error when I try to upload, even though I am using a 16Mhz crystal. And if I try using that modified boards.txt setting with the changed signature then the sketch does not compile. Using the original boards.txt I tried just about every board type (from uno - nano etc) in the menu. Im not sure what to do. please help