IMU Sensor stops updating values after SD Card activated

It's not a stupid thing to do (because we would assume the shields would play well with each other), but it could be the source of your problem if the shields are sharing certain pins (other than power).

Post the exact shields you are using. And you might have a look at the pinouts of each (in their datasheets) to see if anything jumps out. They both might be trying to use the same pin for data.