I need to remove data in a matrix from the arduino and put it into an array-compatible program such as Excel so that I can create a graph of the data. Does anyone have a suggestion on how to get a graph of data collected by the arduino?
If you can manage the array access on the Arduino side, I'd send that into Max / MSP (30-day free trial available). It's a relatively simple matter to parse the data and send it into a matrix, a spreadsheet, a histogram-style plot, a table, etc. It will also permit real-time updating (that would be a feat in Excel, don't know if it's even possible). You can record the incoming data and play it back, save it, etc. Bar graphs are a snap too, using the multislider object.
You can then save your table / matrix data and put it into spreadsheet programs (if you want to that is). If you just want a visualizer and a way to save the data, you don't need to leave Max at all.
Where are you getting the Ardunio matrix data from, out of curiosity?