Linking of Matlab GUI and simulink generated code for arduino

I have created a model in Simulink(part of Matlab) and deployed the code generated by simulink on arduino microcontroller. I have also created a GUI in Matlab which I want to be able to communicated with the code that I have deployed to arduino.

So I have certain sensors who should be read in the gui and based on some logic in the arduino code output signal will be generated.

The problem is that for running the GUI a file called adiosrv.pde needs to be there on arduino . So how can I have both my program and the adiosrv.pde on the microcontroller?