Hum ... We use the VIN because We read you can't use the USB port and the 5V is the same time. Well, we use USB for the communication between the rasp and our board, and sometimes to read data without going through the Rasp. I think it's possible to use some Arduino pin instead of USB but I don't know how it works.
Okay, so my relay is not as good as I thought. Do you know any references for well-manufactured relay modules?