That example code is doing PWM on the relay. The 'Output' variable is a pulse width in milliseconds. The relay is activated for that amount of time and then deactivated until WindowSize milliseconds.
You could use 'Output' as Watts:
if (Output > 2000.0)
{
digitalWrite(Heater1200Pin, HIGH);
digitalWrite(Heater800Pin, HIGH);
}
else
if (Output > 1200.0)
{
digitalWrite(Heater1200Pin, HIGH);
digitalWrite(Heater800Pin, LOW);
}
else
if (Output > 800.0)
{
digitalWrite(Heater1200Pin, LOW);
digitalWrite(Heater800Pin, HIGH);
}
else
{
digitalWrite(Heater1200Pin, LOW);
digitalWrite(Heater800Pin, LOW);
}