It's very interesting but my YUN disappeared from serial port (not showing on IDE) and upload again using Wifi 
The output was this:
Sketch uses 23,384 bytes (81%) of program storage space. Maximum is 28,672 bytes.
Global variables use 1,219 bytes (47%) of dynamic memory, leaving 1,341 bytes for local variables. Maximum is 2,560 bytes.
avrdude: Version 5.11svn, compiled on Jul 14 2014 at 22:18:19
Copyright (c) 2000-2005 Brian Dean, http://www.bdmicro.com/
Copyright (c) 2007-2009 Joerg Wunsch
System wide configuration file is "/etc/avrdude.conf"
User configuration file is "/root/.avrduderc"
User configuration file does not exist or is not a regular file, skipping
Using Port : unknown
Using Programmer : linuxgpio
AVR Part : ATmega32U4
Chip Erase delay : 9000 us
PAGEL : PD7
BS2 : PA0
RESET disposition : dedicated
RETRY pulse : SCK
serial program mode : yes
parallel program mode : yes
Timeout : 200
StabDelay : 100
CmdexeDelay : 25
SyncLoops : 32
ByteDelay : 0
PollIndex : 3
PollValue : 0x53
Memory Detail :
Block Poll Page Polled
Memory Type Mode Delay Size Indx Paged Size Size #Pages MinW MaxW ReadBack
----------- ---- ----- ----- ---- ------ ------ ---- ------ ----- ----- ---------
eeprom 65 10 8 0 no 1024 8 0 9000 9000 0x00 0x00
Block Poll Page Polled
Memory Type Mode Delay Size Indx Paged Size Size #Pages MinW MaxW ReadBack
----------- ---- ----- ----- ---- ------ ------ ---- ------ ----- ----- ---------
flash 65 6 128 0 yes 32768 128 256 4500 4500 0x00 0x00
Block Poll Page Polled
Memory Type Mode Delay Size Indx Paged Size Size #Pages MinW MaxW ReadBack
----------- ---- ----- ----- ---- ------ ------ ---- ------ ----- ----- ---------
lfuse 0 0 0 0 no 1 0 0 9000 9000 0x00 0x00
Block Poll Page Polled
Memory Type Mode Delay Size Indx Paged Size Size #Pages MinW MaxW ReadBack
----------- ---- ----- ----- ---- ------ ------ ---- ------ ----- ----- ---------
hfuse 0 0 0 0 no 1 0 0 9000 9000 0x00 0x00
Block Poll Page Polled
Memory Type Mode Delay Size Indx Paged Size Size #Pages MinW MaxW ReadBack
----------- ---- ----- ----- ---- ------ ------ ---- ------ ----- ----- ---------
efuse 0 0 0 0 no 1 0 0 9000 9000 0x00 0x00
Block Poll Page Polled
Memory Type Mode Delay Size Indx Paged Size Size #Pages MinW MaxW ReadBack
----------- ---- ----- ----- ---- ------ ------ ---- ------ ----- ----- ---------
lock 0 0 0 0 no 1 0 0 9000 9000 0x00 0x00
Block Poll Page Polled
Memory Type Mode Delay Size Indx Paged Size Size #Pages MinW MaxW ReadBack
----------- ---- ----- ----- ---- ------ ------ ---- ------ ----- ----- ---------
calibration 0 0 0 0 no 1 0 0 0 0 0x00 0x00
Block Poll Page Polled
Memory Type Mode Delay Size Indx Paged Size Size #Pages MinW MaxW ReadBack
----------- ---- ----- ----- ---- ------ ------ ---- ------ ----- ----- ---------
signature 0 0 0 0 no 3 0 0 0 0 0x00 0x00
Programmer Type : linuxgpio
Description : Use the Linux sysfs interface to bitbang GPIO lines
avrdude: Calibrating delay loop... calibrated to 46 cycles per us
avrdude: AVR device initialized and ready to accept instructions
Reading | ################################################## | 100% 0.01s
avrdude: Device signature = 0x1e9587
avrdude: NOTE: "flash" memory has been specified, an erase cycle will be performed
To disable this feature, specify the -D option.
avrdude: erasing chip
avrdude: Calibrating delay loop... calibrated to 48 cycles per us
avrdude: reading input file "0xFF"
avrdude: writing lfuse (1 bytes):
Writing | ################################################## | 100% 0.00s
avrdude: 1 bytes of lfuse written
avrdude: verifying lfuse memory against 0xFF:
avrdude: load data lfuse data from input file 0xFF:
avrdude: input file 0xFF contains 1 bytes
avrdude: reading on-chip lfuse data:
Reading | ################################################## | 100% 0.00s
avrdude: verifying ...
avrdude: 1 bytes of lfuse verified
avrdude: reading input file "0xD8"
avrdude: writing hfuse (1 bytes):
Writing | ################################################## | 100% 0.00s
avrdude: 1 bytes of hfuse written
avrdude: verifying hfuse memory against 0xD8:
avrdude: load data hfuse data from input file 0xD8:
avrdude: input file 0xD8 contains 1 bytes
avrdude: reading on-chip hfuse data:
Reading | ################################################## | 100% 0.00s
avrdude: verifying ...
avrdude: 1 bytes of hfuse verified
avrdude: reading input file "0xFB"
avrdude: writing efuse (1 bytes):
Writing | ################################################## | 100% 0.00s
avrdude: 1 bytes of efuse written
avrdude: verifying efuse memory against 0xFB:
avrdude: load data efuse data from input file 0xFB:
avrdude: input file 0xFB contains 1 bytes
avrdude: reading on-chip efuse data:
Reading | ################################################## | 100% 0.00s
avrdude: verifying ...
avrdude: 1 bytes of efuse verified
avrdude: reading input file "/tmp/sketch.hex"
avrdude: writing flash (32748 bytes):
Writing | ################################################## | 100% 14.22s
avrdude: 32748 bytes of flash written
avrdude: verifying flash memory against /tmp/sketch.hex:
avrdude: load data flash data from input file /tmp/sketch.hex:
avrdude: input file /tmp/sketch.hex contains 32748 bytes
avrdude: reading on-chip flash data:
Reading | ################################################## | 100% 13.06s
avrdude: verifying ...
avrdude: 32748 bytes of flash verified
avrdude done. Thank you.