Programing Arduino with Raspberry Pi with 3.2 adafruit touchscreen.

I'm trying to use a Raspberry Pi B+ with a 3.2 Adafruit touchscreen, and the Arduino Ide. For some reason the the top and bottom of the Arduino ide is not visible on the screen, making it impossible to upload the sketch to the Arduino. I only see the middle.

I know this is the Arduino forum, but I'm wondering if any of you have been able to use the Arduino ide with the Pi with a small touchscreen. By the way, I don't have that issue with an hdmi monitor, only with the 3.2 touchscreen.

Here's a video link -