PB4-5-6-7 on the 16U2 are brought out to pads, yes?
Same with PB2-3-4.
PB7 can be a PWM output - so program it for 10 Hz, 100Hz, whatever is convenient for time keeping:
OC0A/OC1C/PCINT7, Bit 7
OC0A, Output Compare Match A output: The PB7 pin can serve as an external output for the Timer/Counter0 Output Compare. The pin has to be configured as an output (DDB7 set “one”) to serve this function. The OC0A pin is also the output pin for the PWM mode timer function.
OC1C, Output Compare Match C output: The PB7 pin can serve as an external output for the Timer/Counter1 Output Compare C. The pin has to be configured as an output (DDB7 set “one”) to serve this function. The OC1C pin is also the output pin for the PWM mode timer function.
PCINT7, Pin Change Interrupt source 7: The PB7 pin can serve as an external interrupt source.