RTC Read issue when running VS1053B.

A link to the MP3 shield would be useful. Is it interfering with the I2C pins?

I am monitoring the RTC on the serial port and updating every second.

All we can see is that, somehow, some when, you read the clock. We can't see when that happens.

If I actually re-enable my analog clock on the display the will lock up the arduino.

Sounds like something is wrong with your code.