My micro-controller is a LM324N
WTF?
youtube How-To: Shrinkify Your Arduino Projects as an example that references an MIT tutorial.
Can you point to this, maybe there's a processor we've never heard of.
Regardless, it will never work with the Arduino IDE.
what differences in wiring would I need to change
Well you will need about 10,000,000 more 324s and then have to wire them up to simulate a processor 
Rob