I'll be the first to admit, I'm not 100% sure I know what I am doing, so I should not doubt you.
The CP2103 DTR line is pin 6 of the J2 header. When connected to the clone, it is pin 6 of JP7 header, the RTS# net in it's schematic. It's connected to the 328 RESET with capacitor C6. So I think I have it connected right.
This is what I understand too, you can get away with 3V3.
Looking at the CP2103 data sheet, Table 1 suggests it will handle 5.8V on any I/O pin. Or am I not understanding the data sheet?
I do have some logic level converters and could breadboard one in between the CP2103 board and the clone, just to be sure. I think the CP2103 is ok, because it returns Board Info in the arduino IDE. There is a software tool for adjusting it's settings that I have been thinking of using it to see if the chip responds. I'll try these things and report my results.
Thanks,
Randy