Yun stucks in one function

I trained a Neural Network in Matlab and used the Matlab Coder to generate C++ Code to include it in my Arduino Yun project.
The Coder generated a main.h and main.cpp file which can be used as a template for the project, I copied all #includes and functions into my Arduino sketch and compiled it without any errors or warnings. But after uploading the Program in my Yun nothing worked. In the serial monitor I can see the number until 2 and then the RX and TX LED on my board are constant on and nothing happens. If I rebuild and upload the same project nothing is shown in she serial monitor, the TX LED is constant on and RX is blinking.

One time I also had the problem that my Yun wasn't recognized by my pc, but after resetting the Linux processor and reconnecting it to my wifi network I could upload the blink example over wifi and some fusebits were changed, afterwards I can use the programming over the COM Port again?!

I have no idea why it's doing these things, is it a problem with my code or with the yun? I once clicked "upload with programmer" is it possbile that it caused a problem with the bootloader or something else?

My sketch:

//Include Files
//#include <FileIO.h>
#include "rt_nonfinite.h"
#include "NeuralNetwork.h"
#include <math.h>
#include <stddef.h>
#include <stdlib.h>
#include <string.h>
#include "rtwtypes.h"
#include "NeuralNetwork_types.h"

// Function Declarations
static emxArray_real_T *argInit_d7351x5_real_T();
static double argInit_real_T();



void setup() {
  // put your setup code here, to run once:
  
    // Initialize the Bridge and the Serial
 // Bridge.begin();
  Serial.begin(115200);

  //while (!SerialUSB); // wait for Serial port to connect.
  while (!Serial) ;
  Serial.println("test messages:\n");

  NeuralNetwork_initialize();
  Serial.println("1");
  
}

void loop() {
  emxArray_real_T *data;
  double activity_data[10];                                           //before [7351]!!
  int activity_size[1];
  double percent;

  int i;
  Serial.println("2");

  // Initialize function 'NeuralNetwork' input arguments.
  // Initialize function input argument 'data'.
  data = argInit_d7351x5_real_T();
  Serial.println("3");

  // Call the entry-point 'NeuralNetwork'.
  NeuralNetwork(data, activity_data, activity_size, &percent);
  Serial.println("3.9");
  emxDestroyArray_real_T(data);
  Serial.println("4");

  Serial.println("NN Output:\n");
  for(i=0;i<10;i++){
  Serial.println(activity_data[i]);
  }
  Serial.println("\n \n Prozent: \n"); //Absatz

  Serial.println(percent);

  delay(50000);
}


// Function Definitions

//
// Arguments    : void
// Return Type  : emxArray_real_T *
//
static emxArray_real_T *argInit_d7351x5_real_T()
{
  emxArray_real_T *result;
  static int iv0[2] = { 10, 5 };                                                  //before { 2, 5}

  int idx0;
  int idx1;

  // Set the size of the array.
  // Change this size to the value that the application requires.
  result = emxCreateND_real_T(2, *(int (*)[2])&iv0[0]);

  // Loop over the array to initialize each element.
  for (idx0 = 0; idx0 < result->size[0UL]; idx0++) {
    for (idx1 = 0; idx1 < 5; idx1++) {
      // Set the value of the array element.
      // Change this value to the value that the application requires.
      result->data[idx0 + result->size[0] * idx1] = argInit_real_T();
    }
  }

  return result;
}

//
// Arguments    : void
// Return Type  : double
//
static double argInit_real_T()
{
  return 0.0;
}

The coder generated so many files that I can't upload them all but the only functions from the code, the board executes are "NeuralNetwork_initialize" which just calls "rt_InitInfAndNaN(8U);" and afterwards the execution stops in "data = argInit_d7351x5_real_T();" .

I can't find a table what the function of the different LEDs is, e.g. when the WLAN LED blinks.... does anyone know where I cant find such a list?

@Ard_Yun,
http://codesnippets.altervista.org/documentation/yun/leds/leds.html

Jesse