compilation problems

hello ,i am trying to compile a programme for my drone am using 2 libraries "#include <Wire.h>" , "#include <EEPROM.h>" and when i add a third librarie called "#include <SoftwareSerial.h>" an error message comme that "Multiple libraries were found for "EEPROM.h" i read about that and i think that the eeprom can't containe all this program so how to solve it , there is the code and message error

message error_________________
Multiple libraries were found for "EEPROM.h"

Used: /home/ubuntu/opt/cores/arduino/avr/libraries/EEPROM

Not used: /home/ubuntu/opt/libraries/latest/arduino_nvm_0_9_1

Multiple libraries were found for "SoftwareSerial.h"

Used: /home/ubuntu/opt/cores/arduino/avr/libraries/SoftwareSerial

Not used: /home/ubuntu/opt/libraries/latest/printoo_library_1_0_2

Not used: /home/ubuntu/opt/libraries/latest/dabble_1_1_0

Using library EEPROM at version 2.0 in folder: /home/ubuntu/opt/cores/arduino/avr/libraries/EEPROM

Using library SoftwareSerial at version 1.0 in folder: /home/ubuntu/opt/cores/arduino/avr/libraries/SoftwareSerial

/tmp/027057494/build/libraries/SoftwareSerial/SoftwareSerial.cpp.o (symbol from plugin): In function `SoftwareSerial::read()':

(.text+0x0): multiple definition of `__vector_3'

/tmp/027057494/build/sketch/sketch_mar17a.ino.cpp.o (symbol from plugin):(.text+0x0): first defined here

collect2: error: ld returned 1 exit status

exit status 1

The code you didn't post is trying to use one interrupt for different purposes.

In particular: "__vector_3" is the vector for External Interrupt 1. That is the interrupt associated with Pin 3 on the Arduino UNO.