Help with printing parallax GPS string to SD card

GPS is navisys GM401R. The GPS module connects to power, ground, Tx, and Rx. I found this code online:

/*
 Example code for connecting a Parallax GPS module to the Arduino
 Igor Gonzalez Martin. 05-04-2007
 igor.gonzalez.martin@gmail.com
 English translation by djmatic 19-05-2007
 Listen for the $GPRMC string and extract the GPS location data from this.
 Display the result in the Arduino's serial monitor.
 */ 
 #include <string.h>
 #include <ctype.h>
 int ledPin = 13;                  // LED test pin
 int rxPin = 0;                    // RX PIN 
 int txPin = 1;                    // TX TX
 int byteGPS=-1;
 char linea[300] = "";
 char comandoGPR[7] = "$GPRMC";
 int cont=0;
 int bien=0;
 int conta=0;
 int indices[13];
 void setup() {
   pinMode(ledPin, OUTPUT);       // Initialize LED pin
   pinMode(rxPin, INPUT);
   pinMode(txPin, OUTPUT);
   Serial.begin(4800);
   for (int i=0;i<300;i++){       // Initialize a buffer for received data
     linea[i]=' ';
   }   
 }
 void loop() {
   digitalWrite(ledPin, HIGH);
   byteGPS=Serial.read();         // Read a byte of the serial port
   if (byteGPS == -1) {           // See if the port is empty yet
     delay(100); 
   } else {
     // note: there is a potential buffer overflow here!
     linea[conta]=byteGPS;        // If there is serial port data, it is put in the buffer
     conta++;                      
     Serial.print(byteGPS, BYTE); 
     if (byteGPS==13){            // If the received byte is = to 13, end of transmission
       // note: the actual end of transmission is <CR><LF> (i.e. 0x13 0x10)
       digitalWrite(ledPin, LOW); 
       cont=0;
       bien=0;
       // The following for loop starts at 1, because this code is clowny and the first byte is the <LF> (0x10) from the previous transmission.
       for (int i=1;i<7;i++){     // Verifies if the received command starts with $GPR
         if (linea[i]==comandoGPR[i-1]){
           bien++;
         }
       }
       if(bien==6){               // If yes, continue and process the data
         for (int i=0;i<300;i++){
           if (linea[i]==','){    // check for the position of the  "," separator
             // note: again, there is a potential buffer overflow here!
             indices[cont]=i;
             cont++;
           }
           if (linea[i]=='*'){    // ... and the "*"
             indices[12]=i;
             cont++;
           }
         }
         Serial.println("");      // ... and write to the serial port
         Serial.println("");
         Serial.println("---------------");
         for (int i=0;i<12;i++){
           switch(i){
             case 0 :Serial.print("Time in UTC (HhMmSs): ");break;
             case 1 :Serial.print("Status (A=OK,V=KO): ");break;
             case 2 :Serial.print("Latitude: ");break;
             case 3 :Serial.print("Direction (N/S): ");break;
             case 4 :Serial.print("Longitude: ");break;
             case 5 :Serial.print("Direction (E/W): ");break;
             case 6 :Serial.print("Velocity in knots: ");break;
             case 7 :Serial.print("Heading in degrees: ");break;
             case 8 :Serial.print("Date UTC (DdMmAa): ");break;
             case 9 :Serial.print("Magnetic degrees: ");break;
             case 10 :Serial.print("(E/W): ");break;
             case 11 :Serial.print("Mode: ");break;
             case 12 :Serial.print("Checksum: ");break;
           }
           for (int j=indices[i];j<(indices[i+1]-1);j++){
             Serial.print(linea[j+1]); 
           }
           Serial.println("");
         }
         Serial.println("---------------");
       }
       conta=0;                    // Reset the buffer
       for (int i=0;i<300;i++){    //  
         linea[i]=' ';             
       }                 
     }
   }
 }

The above works to print the correct GPS string to the serial port like this:

"$GPRMC,154655,A,4428.1874,N,00440.5185,W,000.7,000.0,050407,,,A*6C"

However, as you can see it seems never to reach anything within the "bien == 6" condition block (the switch statement). This is fine, as I don't actually need the stuff in the switch statement (it's just there to make the data easier to understand) as long as the data is correct (which it seems to be). I just need this to print the same data to an SD card situated in an adafruit data logger shield. Typically, I would do this by simply changing the "Serial" to "myFile" for the print statements which print the data I need. The problem is I am having trouble actually finding where the data is coming from. Clearly the GPS is printing accurate GPS coordinates, but I can't tell where in the code it's actually happening, and it's making me feel really inept. If it matters, I am using an Arduino Due. Am I missing something painfully simple?

However, as you can see

See what?

Sorry, I left out a portion of the post. Fixed it.

If you stored the incoming data as a C string, you could use the standard string handling functions, like strstr and strtok to parse your sentences.

You're not the first person to parse NMEA sentences with an Arduino.