I'll post my code if it's needed, but essentially it's reading from one pin, switching it's state then reading another pin.
If you are switching the state of the pin, it must be a digital pin. Digital pins are either LOW (0) or HIGH (1). If the reading was 0, and is now 1, that's a 100% increase. It it was 1 and is now 0, that's a 100% decrease. Not terribly difficult to determine that a +50% change has occurred.
If you are not reading from digital pins, you are not changing the pin's state, so you need to clarify what you are doing. Posting code would be a good idea, too.
If it is WRONG that the readings are jittering, then this may be a hardware question.
If, because of the nature of what is being read, the +/- 50 jitter is normal, and you need a way to ignore it, then sometimes there are hardware solutions, sometimes you just "make the problem go away" with clever software.
Either pursue a software solution in one of the software forums, or tell us more about the source of the signal, if you want help with a hardware-level cure?