I set up a a Nano BLE board to talk to a sensor via SPI and I noticed that the SPI signal levels do not go up to the full 3.3V. This is even after disconnecting the signals from the sensor board. The levels are ~2.8V. The comm frequency can be ruled out as that happens at 1kHz as well as 1MHz.
If you look at the schematic for the Nano BLE you'll see the SCK pin also drives a yellow LED via a 330 ohm
resistor. Perhaps that is causing the pin voltage to droop 0.5V?
Checking the datasheet for the NINA-B3X/nRF52840 shows that it supports drive-strength control on the output
pins, so this might very well be configured for low current drive by default (about 2mA). Setting high
drive strength would up this to 10mA or so.
If the SCK pin is left at the default it will definitely struggle to light an LED through 330 ohms.