I have a need to change the optimization flags in a project, and clearly the Arduino IDE does not allow that. I have been searching around for a command line build system that works on Windows, but no luck so far. Does anyone have a make file that works on Windows, of some other build system that allows more control over the compiler?
In the Development :: Other Software Development section, there have been several threads about using make files. I'm surprised that you weren't able to find something.