Hi @nijupp24
I managed to track down a fork of BOSSA on Github that had a precompiled release, containing a bossac.exe file that should be compatible with the SAMD21E17D. The repository release is located here: https://github.com/ElectronicCats/BOSSA/releases/tag/v1.1.1.
I've tested it on my custom SAMD21G18A board and it worked with that, so hopefully it might work on your SAMD21E17D target.
First of all, I'm presuming you're using a Windows OS.
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Download the bossac-v1.1.1-win32.zip file and extract it. This folder will contain a bossac.exe file.
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Navigate to the directory (on my machine at least): C:\Users\Computer\AppData\Local\Arduino15\packages\arduino\tools\bossac\1.7.0-arduino3\
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Move the current bossac.exe file to somewhere safe in another directory and replace it with the newly extracted one.
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Now try selecting the board "Arduino Zero (Native USB Port)" in the Arduino IDE after selecting the board's COM port and try to compile and upload a simple sketch.
Please let me know if it's successful (or not)? Fingers crossed.