PCB project based on the MKR wifi 1010

I have the Atmel Ice available to flash the ATSAMD21G18-MU microcontroller which I am using. I believe I need a hex file that will be executed during the flashing/bootloading process.
Would I be able to use this github file here as a hex file to flash?

My main goal is to flash the IC to upload code using the native MicroUSB port of my PCB. I am fairly new to this so any advice and helpful information is greatly appreciated.

wire the programmer, then open the Arduino IDE.
In Tools menu:

  • select MKR1010,
  • select the programmer,
  • execute Burn Bootloader

So I can do this through the Arduino IDE program without the need for a hex file?

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